IL_6YDW_065

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

6YDW|1|BA|A|532

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDW_065 not in the Motif Atlas

Geometric match to IL_3OXE_003

Geometric discrepancy: 0.2525

The information below is about IL_3OXE_003

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

6YDW|1|BA|G|531
6YDW|1|BA|A|532
6YDW|1|BA|A|533
6YDW|1|BA|A|534
*
6YDW|1|BA|U|545
6YDW|1|BA|C|546

Current chains

Chain BA

12S rRNA

Nearby chains

Chain B9

Ribosomal protein

Chain BK

Mitochondrial ribosomal protein L11

Chain Bp

mL53

Chain Bq

Uncharacterized protein