IL_6YDW_079

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UG*UUAA

Length

6 nucleotides

Bulged bases

6YDW|1|BA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDW_079 not in the Motif Atlas

Geometric match to IL_6JQ6_004

Geometric discrepancy: 0.1473

The information below is about IL_6JQ6_004

Detailed Annotation

Stack outside cWW

Broad Annotation

Stack outside cWW

Motif group

IL_77710.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

26

Unit IDs

6YDW|1|BA|U|884
6YDW|1|BA|G|885
*
6YDW|1|BA|U|894
6YDW|1|BA|U|895
6YDW|1|BA|A|896
6YDW|1|BA|A|897

Current chains

Chain BA

12S rRNA

Nearby chains

Chain BD

Uncharacterized protein