IL_6YDW_081

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CAUAAUCACUUG*CUUG

Length

16 nucleotides

Bulged bases

6YDW|1|BA|U|939, 6YDW|1|BA|U|958

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YDW|1|BA|C|929
6YDW|1|BA|A|930
6YDW|1|BA|U|931
6YDW|1|BA|A|932
6YDW|1|BA|A|933
6YDW|1|BA|U|934
6YDW|1|BA|C|935
6YDW|1|BA|A|936
6YDW|1|BA|C|937
6YDW|1|BA|U|938
6YDW|1|BA|U|939
6YDW|1|BA|G|940
*
6YDW|1|BA|C|956
6YDW|1|BA|U|957
6YDW|1|BA|U|958
6YDW|1|BA|G|959

Current chains

Chain BA

12S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AV

tRNAMet

Chain An

Aurora kinase A interacting protein 1