IL_6YDW_094

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GCAA*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDW_094 not in the Motif Atlas

Geometric match to IL_6DME_003

Geometric discrepancy: 0.1781

The information below is about IL_6DME_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

10

Unit IDs

6YDW|1|BA|G|1279
6YDW|1|BA|C|1280
6YDW|1|BA|A|1281
6YDW|1|BA|A|1282
*
6YDW|1|BA|U|1316
6YDW|1|BA|A|1317
6YDW|1|BA|C|1318

Current chains

Chain BA

12S rRNA

Nearby chains

Chain BJ

Mitochondrial ribosomal protein L10

Chain BQ

Uncharacterized protein

Chain Bt

Mitochondrial ribosomal protein L57