IL_6YDW_098

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

6YDW|1|BA|A|1395, 6YDW|1|BA|C|1396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDW_098 not in the Motif Atlas

Geometric match to IL_7RQB_098

Geometric discrepancy: 0.1511

The information below is about IL_7RQB_098

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71530.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

6YDW|1|BA|C|1335
6YDW|1|BA|A|1336
*
6YDW|1|BA|U|1394
6YDW|1|BA|A|1395
6YDW|1|BA|C|1396
6YDW|1|BA|G|1397

Current chains

Chain BA

12S rRNA

Nearby chains

Chain BE

ICT1

Chain BN

Uncharacterized protein