IL_6YDW_100

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

6YDW|1|BA|A|1425

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDW_100 not in the Motif Atlas

Geometric match to IL_1U9S_001

Geometric discrepancy: 0.278

The information below is about IL_1U9S_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

6YDW|1|BA|C|1414
6YDW|1|BA|G|1415
*
6YDW|1|BA|C|1424
6YDW|1|BA|A|1425
6YDW|1|BA|G|1426

Current chains

Chain BA

12S rRNA

Nearby chains

Chain AV

tRNAMet