IL_6YDW_108

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CUUGCCAAUUCAG*CUUAUG

Length

19 nucleotides

Bulged bases

6YDW|1|AA|C|599, 6YDW|1|AA|C|600, 6YDW|1|AA|U|604, 6YDW|1|AA|U|697, 6YDW|1|AA|U|699

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YDW|1|AA|C|595
6YDW|1|AA|U|596
6YDW|1|AA|U|597
6YDW|1|AA|G|598
6YDW|1|AA|C|599
6YDW|1|AA|C|600
6YDW|1|AA|A|601
6YDW|1|AA|A|602
6YDW|1|AA|U|603
6YDW|1|AA|U|604
6YDW|1|AA|C|605
6YDW|1|AA|A|606
6YDW|1|AA|G|607
*
6YDW|1|AA|C|695
6YDW|1|AA|U|696
6YDW|1|AA|U|697
6YDW|1|AA|A|698
6YDW|1|AA|U|699
6YDW|1|AA|G|700

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AE

Mitochondrial ribosomal protein S5

Chain AN

Mitochondrial ribosomal protein S14

Chain Ai

mS33

Chain Ao

mS39

Chain BC

Elongation factor G, mitochondrial