IL_6YDW_110
3D structure
- PDB id
- 6YDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GGAACUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YDW_110 not in the Motif Atlas
- Geometric match to IL_8C3A_484
- Geometric discrepancy: 0.1623
- The information below is about IL_8C3A_484
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.2
- Basepair signature
- cWW-cWW-L-cWW-L-R-L-R-L-L
- Number of instances in this motif group
- 3
Unit IDs
6YDW|1|BA|G|801
6YDW|1|BA|G|802
6YDW|1|BA|A|803
6YDW|1|BA|A|804
6YDW|1|BA|C|805
6YDW|1|BA|U|806
6YDW|1|BA|C|807
6YDW|1|BA|G|808
6YDW|1|BA|G|809
*
6YDW|1|BA|C|985
6YDW|1|BA|U|986
6YDW|1|BA|G|987
6YDW|1|BA|U|988
6YDW|1|BA|C|989
Current chains
- Chain BA
- 12S rRNA
Nearby chains
- Chain BE
- ICT1
- Chain BO
- Uncharacterized protein
- Chain BT
- Mitochondrial ribosomal protein L19
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