IL_6YEF_008

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUAGUAG*CGAAACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YEF_008 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.0657

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.1

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

6YEF|1|A|C|241
6YEF|1|A|U|242
6YEF|1|A|U|243
6YEF|1|A|A|244
6YEF|1|A|G|245
6YEF|1|A|U|246
6YEF|1|A|A|247
6YEF|1|A|G|248
*
6YEF|1|A|C|256
6YEF|1|A|G|257
6YEF|1|A|A|258
6YEF|1|A|A|259
6YEF|1|A|A|260
6YEF|1|A|C|261
6YEF|1|A|G|262

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain O

50S ribosomal protein L15