IL_6YEF_014

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAG*UGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YEF_014 not in the Motif Atlas

Homologous match to IL_4WF9_016

Geometric discrepancy: 0.102

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

6YEF|1|A|A|581
6YEF|1|A|G|582
6YEF|1|A|A|583
6YEF|1|A|G|584
*
6YEF|1|A|U|597
6YEF|1|A|G|598
6YEF|1|A|A|599
6YEF|1|A|U|600

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L13

Chain T

50S ribosomal protein L20