IL_6YEF_033
3D structure
- PDB id
- 6YEF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- 6YEF|1|A|A|1200
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YEF_033 not in the Motif Atlas
- Homologous match to IL_5J7L_277
- Geometric discrepancy: 0.0865
- The information below is about IL_5J7L_277
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_38507.2
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
6YEF|1|A|C|1042
6YEF|1|A|U|1043
6YEF|1|A|A|1044
6YEF|1|A|A|1045
6YEF|1|A|G|1046
*
6YEF|1|A|C|1197
6YEF|1|A|G|1198
6YEF|1|A|A|1199
6YEF|1|A|A|1200
6YEF|1|A|G|1201
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 2
- 50S ribosomal protein L30
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain T
- 50S ribosomal protein L20
- Chain U
- 50S ribosomal protein L21
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