IL_6YEF_045
3D structure
- PDB id
- 6YEF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUGAGUAG*UGAAAUC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YEF_045 not in the Motif Atlas
- Homologous match to IL_4WF9_048
- Geometric discrepancy: 0.0776
- The information below is about IL_4WF9_048
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.1
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 18
Unit IDs
6YEF|1|A|G|1300
6YEF|1|A|U|1301
6YEF|1|A|G|1302
6YEF|1|A|A|1303
6YEF|1|A|G|1304
6YEF|1|A|U|1305
6YEF|1|A|A|1306
6YEF|1|A|G|1307
*
6YEF|1|A|U|2038
6YEF|1|A|G|2039
6YEF|1|A|A|2040
6YEF|1|A|A|2041
6YEF|1|A|A|2042
6YEF|1|A|U|2043
6YEF|1|A|C|2044
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 4
- 50S ribosomal protein L32
- Chain F
- 50S ribosomal protein L4
- Chain V
- 50S ribosomal protein L22
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