IL_6YEF_054

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAAGC*GUGAUGG

Length

13 nucleotides

Bulged bases

6YEF|1|A|G|1569

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YEF_054 not in the Motif Atlas

Homologous match to IL_4WF9_058

Geometric discrepancy: 0.1769

The information below is about IL_4WF9_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88190.1

Basepair signature

cWW-L-R-tHS-L-R-L-R-cWW

Number of instances in this motif group

1

Unit IDs

6YEF|1|A|C|1511
6YEF|1|A|U|1512
6YEF|1|A|A|1513
6YEF|1|A|A|1514
6YEF|1|A|G|1515
6YEF|1|A|C|1516
*
6YEF|1|A|G|1564
6YEF|1|A|U|1565
6YEF|1|A|G|1566
6YEF|1|A|A|1567
6YEF|1|A|U|1568
6YEF|1|A|G|1569
6YEF|1|A|G|1570

Current chains

Chain A

23S rRNA

Nearby chains