IL_6YEF_063

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGCUAAA*UGAUGUAUA

Length

16 nucleotides

Bulged bases

6YEF|1|A|U|1828, 6YEF|1|A|U|1843, 6YEF|1|A|U|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YEF_063 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0749

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6YEF|1|A|U|1825
6YEF|1|A|G|1826
6YEF|1|A|C|1827
6YEF|1|A|U|1828
6YEF|1|A|A|1829
6YEF|1|A|A|1830
6YEF|1|A|A|1831
*
6YEF|1|A|U|1840
6YEF|1|A|G|1841
6YEF|1|A|A|1842
6YEF|1|A|U|1843
6YEF|1|A|G|1844
6YEF|1|A|U|1845
6YEF|1|A|A|1846
6YEF|1|A|U|1847
6YEF|1|A|A|1848

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA