IL_6YEF_076

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

6YEF|1|A|A|2466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YEF_076 not in the Motif Atlas

Homologous match to IL_5J7L_324

Geometric discrepancy: 0.147

The information below is about IL_5J7L_324

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

6YEF|1|A|G|2097
6YEF|1|A|A|2098
*
6YEF|1|A|U|2465
6YEF|1|A|A|2466
6YEF|1|A|C|2467
6YEF|1|A|C|2468

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L2

Chain x

Transfer RNA; tRNA