IL_6YEF_083

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUC*GGC

Length

7 nucleotides

Bulged bases

6YEF|1|A|U|2429

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YEF_083 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.2367

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

6YEF|1|A|G|2427
6YEF|1|A|U|2428
6YEF|1|A|U|2429
6YEF|1|A|C|2430
*
6YEF|1|A|G|2441
6YEF|1|A|G|2442
6YEF|1|A|C|2443

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L33 2

Chain 7

50S ribosomal protein L35

Chain O

50S ribosomal protein L15