IL_6YEF_084

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGG*CA(OMC)CU

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YEF_084 not in the Motif Atlas

Homologous match to IL_5J7L_335

Geometric discrepancy: 0.149

The information below is about IL_5J7L_335

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YEF|1|A|A|2480
6YEF|1|A|G|2481
6YEF|1|A|G|2482
*
6YEF|1|A|C|2523
6YEF|1|A|A|2524
6YEF|1|A|OMC|2525
6YEF|1|A|C|2526
6YEF|1|A|U|2527

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L3

Chain P

50S ribosomal protein L16

Chain Z

50S ribosomal protein L27