IL_6YEF_087

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YEF_087 not in the Motif Atlas

Homologous match to IL_4WF9_093

Geometric discrepancy: 0.1132

The information below is about IL_4WF9_093

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6YEF|1|A|C|2493
6YEF|1|A|C|2494
6YEF|1|A|A|2495
6YEF|1|A|A|2496
6YEF|1|A|G|2497
*
6YEF|1|A|C|2507
6YEF|1|A|G|2508
6YEF|1|A|A|2509
6YEF|1|A|C|2510
6YEF|1|A|G|2511

Current chains

Chain A

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain P

50S ribosomal protein L16