IL_6YEF_089

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

6YEF|1|A|G|2603, 6YEF|1|A|A|2604

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YEF_089 not in the Motif Atlas

Homologous match to IL_4WF9_095

Geometric discrepancy: 0.0949

The information below is about IL_4WF9_095

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

6YEF|1|A|C|2537
6YEF|1|A|U|2538
6YEF|1|A|C|2539
*
6YEF|1|A|G|2601
6YEF|1|A|C|2602
6YEF|1|A|G|2603
6YEF|1|A|A|2604
6YEF|1|A|G|2605

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L32

Chain E

50S ribosomal protein L3