IL_6YEF_101

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGGAAG*UGGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YEF_101 not in the Motif Atlas

Homologous match to IL_4WF9_108

Geometric discrepancy: 0.0833

The information below is about IL_4WF9_108

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

6YEF|1|A|U|2867
6YEF|1|A|G|2868
6YEF|1|A|G|2869
6YEF|1|A|A|2870
6YEF|1|A|A|2871
6YEF|1|A|G|2872
*
6YEF|1|A|U|2885
6YEF|1|A|G|2886
6YEF|1|A|G|2887
6YEF|1|A|A|2888
6YEF|1|A|G|2889

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L17

Chain S

50S ribosomal protein L19