3D structure

PDB id
6YEF (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UAAC*GA
Length
6 nucleotides
Bulged bases
6YEF|1|a|A|129, 6YEF|1|a|A|130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6YEF_114 not in the Motif Atlas
Homologous match to IL_4LFB_007
Geometric discrepancy: 0.2644
The information below is about IL_4LFB_007
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_75289.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
4

Unit IDs

6YEF|1|a|U|128
6YEF|1|a|A|129
6YEF|1|a|A|130
6YEF|1|a|C|131
*
6YEF|1|a|G|239
6YEF|1|a|A|240

Current chains

Chain a
16S rRNA

Nearby chains

Chain p
30S ribosomal protein S16
Chain q
30S ribosomal protein S17
Chain t
30S ribosomal protein S20

Coloring options:


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