IL_6YEF_116

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAUAACUU*GAGCUAAUAC

Length

19 nucleotides

Bulged bases

6YEF|1|a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YEF|1|a|G|147
6YEF|1|a|G|148
6YEF|1|a|A|149
6YEF|1|a|U|150
6YEF|1|a|A|151
6YEF|1|a|A|152
6YEF|1|a|C|153
6YEF|1|a|U|154
6YEF|1|a|U|155
*
6YEF|1|a|G|166
6YEF|1|a|A|167
6YEF|1|a|G|168
6YEF|1|a|C|169
6YEF|1|a|U|170
6YEF|1|a|A|171
6YEF|1|a|A|172
6YEF|1|a|U|173
6YEF|1|a|A|174
6YEF|1|a|C|175

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S20