IL_6YEF_125

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAUGAAG*CGUAAAA

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YEF_125 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.2117

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6YEF|1|a|U|417
6YEF|1|a|G|418
6YEF|1|a|A|419
6YEF|1|a|U|420
6YEF|1|a|G|421
6YEF|1|a|A|422
6YEF|1|a|A|423
6YEF|1|a|G|424
*
6YEF|1|a|C|435
6YEF|1|a|G|436
6YEF|1|a|U|437
6YEF|1|a|A|438
6YEF|1|a|A|439
6YEF|1|a|A|440
6YEF|1|a|A|441

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

30S ribosomal protein S4