IL_6YEF_148

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGCAUG*CAUGC

Length

12 nucleotides

Bulged bases

6YEF|1|a|C|1065

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YEF|1|a|G|1062
6YEF|1|a|U|1063
6YEF|1|a|G|1064
6YEF|1|a|C|1065
6YEF|1|a|A|1066
6YEF|1|a|U|1067
6YEF|1|a|G|1068
*
6YEF|1|a|C|1213
6YEF|1|a|A|1214
6YEF|1|a|U|1215
6YEF|1|a|G|1216
6YEF|1|a|C|1217

Current chains

Chain a

16S rRNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain j

ribosomal protein uS10

Chain n

30S ribosomal protein S14

Chain v

mRNA