Loop IL_6YEF

3D structure

PDB id: 6YEF (explore in PDB, NAKB, or RNA 3D Hub)
Description: 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å

Loop

Sequence: ACUAGGAUGUUGG*CCAUCAUUUAAAGAGUGCGUAAUAGCUCACUAGU
Length: 47 nucleotides
Bulged bases: 6YEF|1|A|A|1121, 6YEF|1|A|U|1127, 6YEF|1|A|G|1131, 6YEF|1|A|G|1133, 6YEF|1|A|U|1138, 6YEF|1|A|A|1139, 6YEF|1|A|G|1143, 6YEF|1|A|C|1144, 6YEF|1|A|U|1145
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6YEF|1|A|A|1095
6YEF|1|A|C|1096
6YEF|1|A|U|1097
6YEF|1|A|A|1098
6YEF|1|A|G|1099
6YEF|1|A|G|1100
6YEF|1|A|A|1101
6YEF|1|A|U|1102
6YEF|1|A|G|1103
6YEF|1|A|U|1104
6YEF|1|A|U|1105
6YEF|1|A|G|1106
6YEF|1|A|G|1107
*
6YEF|1|A|C|1119
6YEF|1|A|C|1120
6YEF|1|A|A|1121
6YEF|1|A|U|1122
6YEF|1|A|C|1123
6YEF|1|A|A|1124
6YEF|1|A|U|1125
6YEF|1|A|U|1126
6YEF|1|A|U|1127
6YEF|1|A|A|1128
6YEF|1|A|A|1129
6YEF|1|A|A|1130
6YEF|1|A|G|1131
6YEF|1|A|A|1132
6YEF|1|A|G|1133
6YEF|1|A|U|1134
6YEF|1|A|G|1135
6YEF|1|A|C|1136
6YEF|1|A|G|1137
6YEF|1|A|U|1138
6YEF|1|A|A|1139
6YEF|1|A|A|1140
6YEF|1|A|U|1141
6YEF|1|A|A|1142
6YEF|1|A|G|1143
6YEF|1|A|C|1144
6YEF|1|A|U|1145
6YEF|1|A|C|1146
6YEF|1|A|A|1147
6YEF|1|A|C|1148
6YEF|1|A|U|1149
6YEF|1|A|A|1150
6YEF|1|A|G|1151
6YEF|1|A|U|1152

Current chains

Chain A: 23S rRNA

Nearby chains

Chain 8: 50S ribosomal protein L36
Chain P: 50S ribosomal protein L16

IL_6YEF_172