IL_6YEF_173

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAAGGCUG*CGUUAAGGCUGAGC

Length

23 nucleotides

Bulged bases

6YEF|1|A|U|1525, 6YEF|1|A|U|1551, 6YEF|1|A|U|1552, 6YEF|1|A|G|1555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YEF|1|A|G|1518
6YEF|1|A|U|1519
6YEF|1|A|A|1520
6YEF|1|A|A|1521
6YEF|1|A|G|1522
6YEF|1|A|G|1523
6YEF|1|A|C|1524
6YEF|1|A|U|1525
6YEF|1|A|G|1526
*
6YEF|1|A|C|1549
6YEF|1|A|G|1550
6YEF|1|A|U|1551
6YEF|1|A|U|1552
6YEF|1|A|A|1553
6YEF|1|A|A|1554
6YEF|1|A|G|1555
6YEF|1|A|G|1556
6YEF|1|A|C|1557
6YEF|1|A|U|1558
6YEF|1|A|G|1559
6YEF|1|A|A|1560
6YEF|1|A|G|1561
6YEF|1|A|C|1562

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L2