IL_6YEF_175

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUCGGCACAG*CUGUGUUGGCU

Length

22 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YEF|1|A|A|2123
6YEF|1|A|U|2124
6YEF|1|A|U|2125
6YEF|1|A|C|2126
6YEF|1|A|G|2127
6YEF|1|A|G|2128
6YEF|1|A|C|2129
6YEF|1|A|A|2130
6YEF|1|A|C|2131
6YEF|1|A|A|2132
6YEF|1|A|G|2133
*
6YEF|1|A|C|2210
6YEF|1|A|U|2211
6YEF|1|A|G|2212
6YEF|1|A|U|2213
6YEF|1|A|G|2214
6YEF|1|A|U|2215
6YEF|1|A|U|2216
6YEF|1|A|G|2217
6YEF|1|A|G|2218
6YEF|1|A|C|2219
6YEF|1|A|U|2220

Current chains

Chain A

23S rRNA

Nearby chains