IL_6YEF_188

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUGUACAGGAUAGGUAGGAGC*GCGCUGGUGGGAUACUACCCUAG

Length

45 nucleotides

Bulged bases

6YEF|1|A|U|2138, 6YEF|1|A|A|2139, 6YEF|1|A|C|2140, 6YEF|1|A|A|2144, 6YEF|1|A|U|2145, 6YEF|1|A|A|2153, 6YEF|1|A|U|2194

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YEF|1|A|C|2134
6YEF|1|A|U|2135
6YEF|1|A|U|2136
6YEF|1|A|G|2137
6YEF|1|A|U|2138
6YEF|1|A|A|2139
6YEF|1|A|C|2140
6YEF|1|A|A|2141
6YEF|1|A|G|2142
6YEF|1|A|G|2143
6YEF|1|A|A|2144
6YEF|1|A|U|2145
6YEF|1|A|A|2146
6YEF|1|A|G|2147
6YEF|1|A|G|2148
6YEF|1|A|U|2149
6YEF|1|A|A|2150
6YEF|1|A|G|2151
6YEF|1|A|G|2152
6YEF|1|A|A|2153
6YEF|1|A|G|2154
6YEF|1|A|C|2155
*
6YEF|1|A|G|2187
6YEF|1|A|C|2188
6YEF|1|A|G|2189
6YEF|1|A|C|2190
6YEF|1|A|U|2191
6YEF|1|A|G|2192
6YEF|1|A|G|2193
6YEF|1|A|U|2194
6YEF|1|A|G|2195
6YEF|1|A|G|2196
6YEF|1|A|G|2197
6YEF|1|A|A|2198
6YEF|1|A|U|2199
6YEF|1|A|A|2200
6YEF|1|A|C|2201
6YEF|1|A|U|2202
6YEF|1|A|A|2203
6YEF|1|A|C|2204
6YEF|1|A|C|2205
6YEF|1|A|C|2206
6YEF|1|A|U|2207
6YEF|1|A|A|2208
6YEF|1|A|G|2209

Current chains

Chain A

23S rRNA

Nearby chains