IL_6YEF_190

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAGU*AG

Length

6 nucleotides

Bulged bases

6YEF|1|a|G|259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YEF_190 not in the Motif Atlas

Homologous match to IL_6CZR_405

Geometric discrepancy: 0.231

The information below is about IL_6CZR_405

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47074.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6YEF|1|a|U|257
6YEF|1|a|A|258
6YEF|1|a|G|259
6YEF|1|a|U|260
*
6YEF|1|a|A|282
6YEF|1|a|G|283

Current chains

Chain a

16S rRNA

Nearby chains

Chain q

30S ribosomal protein S17