IL_6YHS_050

3D structure

PDB id

6YHS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUGUAG*UGAGAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YHS_050 not in the Motif Atlas

Geometric match to IL_7A0S_027

Geometric discrepancy: 0.3991

The information below is about IL_7A0S_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_81631.1

Basepair signature

cWW-L-R-cSH-R-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

6YHS|1|1|A|1461
6YHS|1|1|U|1462
6YHS|1|1|G|1463
6YHS|1|1|U|1464
6YHS|1|1|A|1465
6YHS|1|1|G|1466
*
6YHS|1|1|U|1502
6YHS|1|1|G|1503
6YHS|1|1|A|1504
6YHS|1|1|G|1505
6YHS|1|1|A|1506
6YHS|1|1|U|1507

Current chains

Chain 1

23S ribosomal RNA

Nearby chains