IL_6YHS_065
3D structure
- PDB id
- 6YHS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-amikacin complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 6YHS|1|1|A|1927, 6YHS|1|1|U|1933
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YHS_065 not in the Motif Atlas
- Homologous match to IL_7A0S_072
- Geometric discrepancy: 0.1465
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
6YHS|1|1|C|1923
6YHS|1|1|G|1924
6YHS|1|1|A|1925
6YHS|1|1|A|1926
6YHS|1|1|A|1927
6YHS|1|1|U|1928
6YHS|1|1|U|1929
6YHS|1|1|C|1930
6YHS|1|1|C|1931
6YHS|1|1|U|1932
6YHS|1|1|U|1933
6YHS|1|1|G|1934
*
6YHS|1|1|C|1950
6YHS|1|1|C|1951
6YHS|1|1|U|1952
6YHS|1|1|G|1953
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain A
- 50S ribosomal protein L2
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