IL_6YHS_068

3D structure

PDB id

6YHS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUG*CU

Length

5 nucleotides

Bulged bases

6YHS|1|1|U|2057

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YHS_068 not in the Motif Atlas

Homologous match to IL_4WF9_080

Geometric discrepancy: 0.0995

The information below is about IL_4WF9_080

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

6YHS|1|1|G|2056
6YHS|1|1|U|2057
6YHS|1|1|G|2058
*
6YHS|1|1|C|2431
6YHS|1|1|U|2432

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain H

50S ribosomal protein L15