IL_6YHS_075

3D structure

PDB id

6YHS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

6YHS|1|1|U|2391

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YHS_075 not in the Motif Atlas

Geometric match to IL_8CRE_056

Geometric discrepancy: 0.3914

The information below is about IL_8CRE_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6YHS|1|1|U|2390
6YHS|1|1|U|2391
6YHS|1|1|C|2392
*
6YHS|1|1|G|2403
6YHS|1|1|G|2404

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L15

Chain Y

50S ribosomal protein L33

Chain a

50S ribosomal protein L35