IL_6YHS_080
3D structure
- PDB id
- 6YHS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-amikacin complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CCAAG*CGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YHS_080 not in the Motif Atlas
- Homologous match to IL_5J7L_338
- Geometric discrepancy: 0.0887
- The information below is about IL_5J7L_338
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
6YHS|1|1|C|2455
6YHS|1|1|C|2456
6YHS|1|1|A|2457
6YHS|1|1|A|2458
6YHS|1|1|G|2459
*
6YHS|1|1|C|2469
6YHS|1|1|G|2470
6YHS|1|1|A|2471
6YHS|1|1|C|2472
6YHS|1|1|G|2473
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain I
- 50S ribosomal protein L16
- Chain b
- 50S ribosomal protein L36
Coloring options: