IL_6YHS_087
3D structure
- PDB id
- 6YHS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-amikacin complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CCUAGUAC*GGACCAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YHS_087 not in the Motif Atlas
- Geometric match to IL_5J7L_289
- Geometric discrepancy: 0.3276
- The information below is about IL_5J7L_289
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6YHS|1|1|C|2640
6YHS|1|1|C|2641
6YHS|1|1|U|2642
6YHS|1|1|A|2643
6YHS|1|1|G|2644
6YHS|1|1|U|2645
6YHS|1|1|A|2646
6YHS|1|1|C|2647
*
6YHS|1|1|G|2652
6YHS|1|1|G|2653
6YHS|1|1|A|2654
6YHS|1|1|C|2655
6YHS|1|1|C|2656
6YHS|1|1|A|2657
6YHS|1|1|G|2658
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L6
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