IL_6YLG_016
3D structure
- PDB id
- 6YLG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUU*AUA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YLG_016 not in the Motif Atlas
- Homologous match to IL_5TBW_016
- Geometric discrepancy: 0.1385
- The information below is about IL_5TBW_016
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6YLG|1|1|U|429
6YLG|1|1|U|430
6YLG|1|1|U|431
*
6YLG|1|1|A|628
6YLG|1|1|U|629
6YLG|1|1|A|630
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain O
- 60S ribosomal protein L16-A
- Chain c
- Ribosome biogenesis protein ALB1
- Chain e
- 60S ribosomal protein L32
- Chain f
- 60S ribosomal protein L33-A
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