3D structure

PDB id
6YLG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GGAUAAAUC*GGAAUAC
Length
16 nucleotides
Bulged bases
6YLG|1|1|A|519, 6YLG|1|1|U|520
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6YLG_019 not in the Motif Atlas
Homologous match to IL_5TBW_019
Geometric discrepancy: 0.0936
The information below is about IL_5TBW_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_74024.1
Basepair signature
cWW-L-R-L-R-L-R-L-R-L-R-cWW
Number of instances in this motif group
2

Unit IDs

6YLG|1|1|G|517
6YLG|1|1|G|518
6YLG|1|1|A|519
6YLG|1|1|U|520
6YLG|1|1|A|521
6YLG|1|1|A|522
6YLG|1|1|A|523
6YLG|1|1|U|524
6YLG|1|1|C|525
*
6YLG|1|1|G|567
6YLG|1|1|G|568
6YLG|1|1|A|569
6YLG|1|1|A|570
6YLG|1|1|U|571
6YLG|1|1|A|572
6YLG|1|1|C|573

Current chains

Chain 1
25S rRNA

Nearby chains

Chain C
60S ribosomal protein L4-A
Chain F
60S ribosomal protein L7-A
Chain M
60S ribosomal protein L14-A
Chain S
60S ribosomal protein L20-A

Coloring options:


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