IL_6YLG_024

3D structure

PDB id

6YLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

6YLG|1|1|A|780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YLG_024 not in the Motif Atlas

Geometric match to IL_4R4V_004

Geometric discrepancy: 0.339

The information below is about IL_4R4V_004

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6YLG|1|1|C|752
6YLG|1|1|C|753
*
6YLG|1|1|G|779
6YLG|1|1|A|780
6YLG|1|1|G|781

Current chains

Chain 1

25S rRNA

Nearby chains

Chain Q

60S ribosomal protein L18-A

Chain a

60S ribosomal protein L28