IL_6YLG_086

3D structure

PDB id

6YLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUGUAGAAUAAG*CUAC

Length

17 nucleotides

Bulged bases

6YLG|1|1|U|2453, 6YLG|1|1|U|2460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YLG|1|1|G|2451
6YLG|1|1|G|2452
6YLG|1|1|U|2453
6YLG|1|1|G|2454
6YLG|1|1|U|2455
6YLG|1|1|A|2456
6YLG|1|1|G|2457
6YLG|1|1|A|2458
6YLG|1|1|A|2459
6YLG|1|1|U|2460
6YLG|1|1|A|2461
6YLG|1|1|A|2462
6YLG|1|1|G|2463
*
6YLG|1|1|C|2492
6YLG|1|1|U|2493
6YLG|1|1|A|2494
6YLG|1|1|C|2495

Current chains

Chain 1

25S rRNA

Nearby chains

Chain o

60S ribosomal protein L1-A

Chain t

Protein SDA1