IL_6YLG_136

3D structure

PDB id

6YLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

6YLG|1|1|U|3341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YLG_136 not in the Motif Atlas

Geometric match to IL_1ET4_002

Geometric discrepancy: 0.3605

The information below is about IL_1ET4_002

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6YLG|1|1|G|3340
6YLG|1|1|U|3341
6YLG|1|1|A|3342
*
6YLG|1|1|U|3363
6YLG|1|1|C|3364

Current chains

Chain 1

25S rRNA

Nearby chains

Chain u

Ribosome biogenesis protein RLP24