IL_6YLH_031

3D structure

PDB id

6YLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rix1-Rea1 pre-60S particle - full composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUU*AUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YLH_031 not in the Motif Atlas

Homologous match to IL_5TBW_031

Geometric discrepancy: 0.0868

The information below is about IL_5TBW_031

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6YLH|1|1|G|869
6YLH|1|1|G|870
6YLH|1|1|U|871
6YLH|1|1|U|872
*
6YLH|1|1|A|888
6YLH|1|1|U|889
6YLH|1|1|C|890

Current chains

Chain 1

25S rRNA

Nearby chains

Chain j

60S ribosomal protein L37-A