IL_6YLH_032

3D structure

PDB id

6YLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rix1-Rea1 pre-60S particle - full composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

6YLH|1|1|U|874

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YLH_032 not in the Motif Atlas

Geometric match to IL_7RQB_080

Geometric discrepancy: 0.2007

The information below is about IL_7RQB_080

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

6YLH|1|1|C|873
6YLH|1|1|U|874
6YLH|1|1|G|875
*
6YLH|1|1|C|886
6YLH|1|1|G|887

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain b

Nucleolar GTP-binding protein 1

Chain j

60S ribosomal protein L37-A