IL_6YLH_052
3D structure
- PDB id
- 6YLH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rix1-Rea1 pre-60S particle - full composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAG*CG
- Length
- 5 nucleotides
- Bulged bases
- 6YLH|1|1|A|1399
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YLH_052 not in the Motif Atlas
- Geometric match to IL_5WWT_001
- Geometric discrepancy: 0.3521
- The information below is about IL_5WWT_001
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.6
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 130
Unit IDs
6YLH|1|1|U|1398
6YLH|1|1|A|1399
6YLH|1|1|G|1400
*
6YLH|1|1|C|1411
6YLH|1|1|G|1412
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain E
- 60S ribosomal protein L6-A
- Chain c
- Ribosome biogenesis protein ALB1
- Chain e
- 60S ribosomal protein L32
Coloring options: