IL_6YLH_067

3D structure

PDB id

6YLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rix1-Rea1 pre-60S particle - full composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YLH_067 not in the Motif Atlas

Homologous match to IL_8C3A_081

Geometric discrepancy: 0.0886

The information below is about IL_8C3A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54997.8

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

8

Unit IDs

6YLH|1|1|A|1895
6YLH|1|1|A|1896
6YLH|1|1|G|1897
*
6YLH|1|1|C|2338
6YLH|1|1|C|2339
6YLH|1|1|U|2340

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain I

Bud site selection protein 20

Chain V

60S ribosomal protein L23-A

Chain u

Ribosome biogenesis protein RLP24