IL_6YLH_077

3D structure

PDB id

6YLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rix1-Rea1 pre-60S particle - full composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

6YLH|1|1|U|2205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YLH_077 not in the Motif Atlas

Geometric match to IL_7KVT_002

Geometric discrepancy: 0.2358

The information below is about IL_7KVT_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6YLH|1|1|C|2204
6YLH|1|1|U|2205
6YLH|1|1|G|2206
*
6YLH|1|1|C|2237
6YLH|1|1|G|2238

Current chains

Chain 1

25S rRNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain t

Protein SDA1