IL_6YLH_080
3D structure
- PDB id
- 6YLH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rix1-Rea1 pre-60S particle - full composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAG*UCUC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YLH_080 not in the Motif Atlas
- Geometric match to IL_1D4R_001
- Geometric discrepancy: 0.1957
- The information below is about IL_1D4R_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
6YLH|1|1|G|2250
6YLH|1|1|G|2251
6YLH|1|1|A|2252
6YLH|1|1|G|2253
*
6YLH|1|1|U|2264
6YLH|1|1|C|2265
6YLH|1|1|U|2266
6YLH|1|1|C|2267
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 0
- Pre-rRNA-processing protein IPI3
- Chain K
- Pre-rRNA-processing protein IPI1
- Chain m
- Nucleolar GTP-binding protein 2
- Chain t
- Protein SDA1
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