IL_6YLH_088
3D structure
- PDB id
- 6YLH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rix1-Rea1 pre-60S particle - full composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAU*AGUAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YLH_088 not in the Motif Atlas
- Geometric match to IL_4WF9_086
- Geometric discrepancy: 0.1787
- The information below is about IL_4WF9_086
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_14250.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 10
Unit IDs
6YLH|1|1|C|2666
6YLH|1|1|A|2667
6YLH|1|1|U|2668
*
6YLH|1|1|A|2686
6YLH|1|1|G|2687
6YLH|1|1|U|2688
6YLH|1|1|A|2689
6YLH|1|1|G|2690
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain 5
- rRNA-processing protein CGR1
- Chain D
- 60S ribosomal protein L5
- Chain J
- 60S ribosomal protein L11-A
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