IL_6YLX_013
3D structure
- PDB id
- 6YLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-60S State NE1 (TAP-Flag-Nop53)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGAC*GUU
- Length
- 7 nucleotides
- Bulged bases
- 6YLX|1|1|A|338
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YLX_013 not in the Motif Atlas
- Geometric match to IL_5M0H_001
- Geometric discrepancy: 0.2458
- The information below is about IL_5M0H_001
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6YLX|1|1|A|336
6YLX|1|1|G|337
6YLX|1|1|A|338
6YLX|1|1|C|339
*
6YLX|1|2|G|25
6YLX|1|2|U|26
6YLX|1|2|U|27
Current chains
- Chain 1
- 25S rRNA
- Chain 2
- 5.8S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain L
- 60S ribosomal protein L13-A
- Chain Y
- 60S ribosomal protein L26-A
Coloring options: