3D structure

PDB id
6YLX (explore in PDB, NAKB, or RNA 3D Hub)
Description
pre-60S State NE1 (TAP-Flag-Nop53)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CUGAUG*CGGAUG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6YLX_026 not in the Motif Atlas
Homologous match to IL_8C3A_028
Geometric discrepancy: 0.146
The information below is about IL_8C3A_028
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_82488.1
Basepair signature
cWW-tSH-tSH-tHS-cWW-cWW
Number of instances in this motif group
7

Unit IDs

6YLX|1|1|C|758
6YLX|1|1|U|759
6YLX|1|1|G|760
6YLX|1|1|A|761
6YLX|1|1|U|762
6YLX|1|1|G|763
*
6YLX|1|1|C|768
6YLX|1|1|G|769
6YLX|1|1|G|770
6YLX|1|1|A|771
6YLX|1|1|U|772
6YLX|1|1|G|773

Current chains

Chain 1
25S rRNA

Nearby chains

Chain L
60S ribosomal protein L13-A
Chain a
60S ribosomal protein L28

Coloring options:


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