IL_6YLX_028

3D structure

PDB id

6YLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE1 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAAG*CUAGUAGC

Length

13 nucleotides

Bulged bases

6YLX|1|1|A|933, 6YLX|1|1|G|937

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YLX|1|1|G|805
6YLX|1|1|A|806
6YLX|1|1|A|807
6YLX|1|1|A|808
6YLX|1|1|G|809
*
6YLX|1|1|C|931
6YLX|1|1|U|932
6YLX|1|1|A|933
6YLX|1|1|G|934
6YLX|1|1|U|935
6YLX|1|1|A|936
6YLX|1|1|G|937
6YLX|1|1|C|938

Current chains

Chain 1

25S rRNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain L

60S ribosomal protein L13-A

Chain j

60S ribosomal protein L37-A

Chain w

27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase